Hippunfold_quick

hippunfold_quick is designed to point directly to an input image from a single subject and generate an output folder.

HippUnfold-Quick Command-line interface

Run hippunfold for a single subject.

usage: hippunfold_quick [-h] -i INPUT -o OUTPUT -s SUBJECT -m
                        {T1w,T2w,dsegtissue} [--temp-dir TEMP_DIR] [-n]
                        [--hemi {L,R}]

Named Arguments

-i, --input

File path to your input NIfTI image. Must have .nii.gz extension.

-o, --output

Path to your desired output folder.

-s, --subject

Subject ID (e.g., 001).

-m, --modality

Possible choices: T1w, T2w, dsegtissue

Image modality - choose between: T1w, T2w, dsegtissue

--temp-dir

Optional temporary directory. If not specified, a system temp directory will be used.

-n, --dry-run

Execute a dry run without actually running the full pipeline.

Default: False

--hemi

Possible choices: L, R

Brain hemisphere, tequired for dsegtissue modality. Choose between ‘L’ or ‘R’.